Environmental DNA (eDNA) data from the CCGS Sir John Franklin, NOAA Bell M. Shimada and R/V TINRO during the 2022 International Year of the Salmon Pan-Pacific Winter High Seas Expedition

10.5061/dryad.c2fqz61nn

Amplicon sequence variant (asv) dataset from multi amplicon metabarcoding environmental DNA analysis from the International Year of the Salmon Signature expedition to the Northeast Pacific in Feb/Mar 2022. A table of all asv generated in the study is provided in ASV.csv, broken down by amplicon and sample and listing the occurance of said asv in said sample. Further, total reads per amplicon/sample bin are recorded as well as a taxonomic assignment. Note that this data is provided prior to filtering, e.g. "Homo sapiens" reads are abundant and should be considered contamination. The metadata to sampling stations is provided in the sample_metadata.csv which contains the date, lat/long, as well as detailed environmental metadata associated with the sample. Refer to Deeg et al. "Spatiotemporal patterns of salmon winter habitat usage in the Northeast Pacific uncovered by environmental DNA" ICES Journal of Marine Science 2025 (https://doi.org/10.1093/icesjms/fsaf104) for detailed information on sample collection, sequencing and bioinformatic processing.

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Licence: CC0 1.0

Data and Resources

Data and Supplementary MaterialsZIP

Dataset from multi amplicon metabarcoding environmental DNA analysis from the...

Dataset: Spatiotemporal patterns of salmon...HTML

Link to the dataset as originally published on Dryad

Citation

Related Works

{"en": "Spatiotemporal patterns of salmon winter habitat usage in the Northeast Pacific uncovered by environmental DNA", "fr": "Les mod\u00e8les spatio-temporels de l'utilisation de l'habitat hivernal du saumon dans le Pacifique Nord-Est d\u00e9couverts par l'ADN environnemental"}
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Keywords

Dataset extent

Metadata Reference Date(s) November 05, 2025 (Publication)
November 05, 2025 (Revision)
Data Reference Date(s) February 05, 2022 (Creation)
Frequency of Update As Needed

Access full metadata here

Source last modified July 30, 2026 at 19:38

Other records harvested from IYS WAF

Responsible Party 1
Affiliation
North Pacific Anadromous Fish Commission ROR logo
Email
secretariat@npafc.org
Role
Publisher
Responsible Party 2
Name
Deeg, Christoph
Affiliation
Fisheries and Oceans Canada ROR logo
Email
Christoph.Deeg@dfo-mpo.gc.ca
Role
  • Author
  • Custodian
  • Owner
  • Point of Contact
  • Principal Investigator
Responsible Party 3
Name
Tam, Christopher
Affiliation
Department of Fisheries and Oceans ROR logo
Role
  • Author
  • Principal Investigator
Responsible Party 4
Name
Esenkulova, Svetlana
Affiliation
Pacific Salmon Foundation ROR logo
Role
  • Author
  • Principal Investigator
Responsible Party 5
Name
Wells, Abi
Affiliation
National Oceanic and Atmospheric Administration ROR logo
Email
abigail.wells@noaa.gov
Role
  • Author
  • Principal Investigator
Responsible Party 6
Name
Soshnina, Valeriia
Affiliation
All-Russian Research Institute Fisheries and Oceanography ROR logo
Role
  • Author
  • Principal Investigator
Responsible Party 7
Name
Ens, Nicholas
Affiliation
University of Victoria ROR logo
Role
  • Author
  • Principal Investigator
Responsible Party 8
Name
Schulze, Angela
Affiliation
Department of Fisheries and Oceans ROR logo
Role
  • Author
  • Principal Investigator
Responsible Party 9
Name
Miller-Saunders, Kristi ORCID logo
Affiliation
Fisheries and Oceans Canada ROR logo
Email
kristi.saunders@dfo-mpo.gc.ca
Role
  • Author
  • Principal Investigator
Responsible Party 10
Affiliation
Hakai Institute ROR logo
Email
data@hakai.org
Role
Distributor

Field Value
Ocean Variables
  • Phytoplankton biomass and diversity
  • Zooplankton biomass and diversity
  • Fish abundance and distribution
  • Microbe biomass and diversity
  • Marine turtles, birds, mammals abundance and distribution
  • Hard coral cover and composition
  • Seagrass cover and composition
  • Macroalgal canopy cover and composition
  • Invertebrate abundance and distribution
Scope Dataset
Status Completed
Associated Datasets
Associated Datasets 1
Parent or Linked Dataset Title
{"en": "Spatiotemporal patterns of salmon winter habitat usage in the Northeast Pacific uncovered by environmental DNA", "fr": "Les mod\u00e8les spatio-temporels de l'utilisation de l'habitat hivernal du saumon dans le Pacifique Nord-Est d\u00e9couverts par l'ADN environnemental"}
Parent or Linked Dataset identifier
https://doi.org/10.1093/icesjms/fsaf104
Association Type
crossReference
Maintenance Note Generated from https://hakaiinstitute.github.io/hakai-metadata-entry-form#/en/iys/8uVZo4FfAIdLqGWmrgPsQ1Jfs9P2/-NUcx5QqllIa_q2ZWszT
Spatial Extent { "coordinates": [ [ [ -146.987533333333, 58.0061833333333 ], [ -143.837716, 57.008466 ], [ -140.978466, 56.93305 ], [ -134.904316, 52.9722 ], [ -132.11135, 50.950383 ], [ -126.385166666667, 47.7898833333333 ], [ -130.6276, 46.7975 ], [ -135.001416666667, 45.0000166666667 ], [ -167.1688, 45.3843 ], [ -169.3867, 46.2883 ], [ -169.40751, 46.29369 ], [ -171.155, 47.91104 ], [ -169.065, 49.065 ], [ -165.1367, 50.0767 ], [ -151.875183333333, 56.3804666666667 ], [ -150.982833333333, 56.99215 ], [ -146.987533333333, 58.0061833333333 ] ] ], "type": "Polygon" }
North Bounding Latitude 45.0000166666667
South Bounding Latitude 58.0061833333333
East Bounding Longitude -126.385166666667
West Bounding Longitude -171.155
Temporal Extent
Begin
2022-02-05
End
2022-03-20
Vertical Extent
Min
2.0
Max
3.0
Default Locale English
Citation identifier
Code
https://doi.org/10.5061/dryad.c2fqz61nn
Included in Data Catalogue
Included in Data Catalogue 1
Name
North Pacific Anadromous Fish Commission
Description
 
URL
https://data.npafc.org